Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03767.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2970
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31


Found at i:2609 original size:15 final size:15

Alignment explanation


    Indices: 2589--2620  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2579 CCTACCTGCG

                           
       2589 TCCTGTTGTCTGTTA
          1 TCCTGTTGTCTGTTA

                           
       2604 TCCTGTTGTCTGTTA
          1 TCCTGTTGTCTGTTA

              
       2619 TC
          1 TC

       2621 TTTCACCATT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.06, C:0.22, G:0.19, T:0.53


Consensus pattern (15 bp):   
TCCTGTTGTCTGTTA
Done.