Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03774.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 732

Length: 1220
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27


Found at i:319 original size:26 final size:25

Alignment explanation


    Indices: 286--355  Score: 79
    Period size: 26  Copynumber: 2.8  Consensus size: 25

        276 TCAAGAAAAG

                                      
        286 AATGTGCAAGCTGCAAGCTCAGCAAA
          1 AATGTGCAAGCTGCAAGCTCAGC-AA

                         *   * *     
        312 AATGTGCAAGCTGTAAGATTAGCAA
          1 AATGTGCAAGCTGCAAGCTCAGCAA

            *                   
        337 GATGT-CAAAGCTGCAAGCT
          1 AATGTGC-AAGCTGCAAGCT

        356 TAGCGAGAAG


Statistics
Matches: 37,  Mismatches: 6, Indels: 3
        0.80            0.13        0.07

Matches are distributed among these distances:
  24    1  0.03
  25   16  0.43
  26   20  0.54

ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20


Consensus pattern (25 bp):   
AATGTGCAAGCTGCAAGCTCAGCAA
Done.