Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03776.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3685
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31


Found at i:1081 original size:84 final size:87

Alignment explanation


    Indices: 946--1119  Score: 221
    Period size: 84  Copynumber: 2.0  Consensus size: 87

        936 AGGCCTTGTT

                *                               *   * **                     
        946 CTTGGGTAATAATTGCAATGATAAAAGTCAAATGTTTTTTGTCTGTAGAAGACTTGTTTAACTGA
          1 CTTGAGTAATAATTGCAATGATAAAAGTCAAATGTTCTTTATAGGTAGAAGACTTGTTTAACTGA

                                   
       1011 GG-TTAGAA-TGTTAATAAATTG
         66 GGTTTA-AACTGTTAATAAATTG

                                *   *                           *       *    
       1032 CTTGAGTAATAATTGCAATGGT-ATAGT-AAATGTTCTTTATAGGTAGAAGAGTTGTTTAGCTGA
          1 CTTGAGTAATAATTGCAATGATAAAAGTCAAATGTTCTTTATAGGTAGAAGACTTGTTTAACTGA

                             *    
       1095 GGTTTAAACTGTTAATAGATTG
         66 GGTTTAAACTGTTAATAAATTG

               
       1117 CTT
          1 CTT

       1120 CACAGTTCAC


Statistics
Matches: 76,  Mismatches: 10, Indels: 5
        0.84            0.11        0.05

Matches are distributed among these distances:
  84   34  0.45
  85   22  0.29
  86   20  0.26

ACGTcount: A:0.32, C:0.07, G:0.22, T:0.39


Consensus pattern (87 bp):   
CTTGAGTAATAATTGCAATGATAAAAGTCAAATGTTCTTTATAGGTAGAAGACTTGTTTAACTGA
GGTTTAAACTGTTAATAAATTG
Done.