Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03788.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5186
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.36


Found at i:5108 original size:19 final size:20

Alignment explanation


    Indices: 5080--5117  Score: 69
    Period size: 19  Copynumber: 1.9  Consensus size: 20

       5070 CGCAAGGTTT

                                
       5080 AAAATATTTTAAAATAAATA
          1 AAAATATTTTAAAATAAATA

                               
       5100 AAAAT-TTTTAAAATAAAT
          1 AAAATATTTTAAAATAAAT

       5118 TGTACGTGAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  19   13  0.72
  20    5  0.28

ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37


Consensus pattern (20 bp):   
AAAATATTTTAAAATAAATA

Found at i:5169 original size:19 final size:20

Alignment explanation


    Indices: 5145--5182  Score: 60
    Period size: 19  Copynumber: 1.9  Consensus size: 20

       5135 TAAAATATCA

                  *             
       5145 AAAATTTAAA-TTTAAAATC
          1 AAAATTGAAATTTTAAAATC

                               
       5164 AAAATTGAAATTTTAAAAT
          1 AAAATTGAAATTTTAAAAT

       5183 TTTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  19    9  0.53
  20    8  0.47

ACGTcount: A:0.58, C:0.03, G:0.03, T:0.37


Consensus pattern (20 bp):   
AAAATTGAAATTTTAAAATC
Done.