Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00512.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5032
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:4381 original size:22 final size:21

Alignment explanation


    Indices: 4353--4405  Score: 72
    Period size: 22  Copynumber: 2.5  Consensus size: 21

       4343 TTGATGATGA

                                  
       4353 TATTTATAATT-TTTTTACTTT
          1 TATTTATAATTATTTTTA-TTT

                     *            
       4374 TATGTTATATTTATTTTTATTT
          1 TAT-TTATAATTATTTTTATTT

                      
       4396 TATTTATAAT
          1 TATTTATAAT

       4406 GCCTATTGTA


Statistics
Matches: 28,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  21    9  0.32
  22   13  0.46
  23    6  0.21

ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70


Consensus pattern (21 bp):   
TATTTATAATTATTTTTATTT
Done.