Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03793.P19

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4291
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:3738 original size:17 final size:17

Alignment explanation


    Indices: 3716--3749  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       3706 AGCTCAATTA

                             
       3716 ATTGTTGGTTAGTGAAT
          1 ATTGTTGGTTAGTGAAT

                             
       3733 ATTGTTGGTTAGTGAAT
          1 ATTGTTGGTTAGTGAAT

       3750 GCGTTCTTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47


Consensus pattern (17 bp):   
ATTGTTGGTTAGTGAAT
Done.