Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00513.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 863

Length: 1439
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:871 original size:44 final size:44

Alignment explanation


    Indices: 808--896  Score: 169
    Period size: 44  Copynumber: 2.0  Consensus size: 44

        798 ATATACAACT

                                      *                 
        808 AAAGTTGCGTACTCCTGGCTCATTCTCAAAAAGATAGGCATGGG
          1 AAAGTTGCGTACTCCTGGCTCATTCTAAAAAAGATAGGCATGGG

                                                        
        852 AAAGTTGCGTACTCCTGGCTCATTCTAAAAAAGATAGGCATGGG
          1 AAAGTTGCGTACTCCTGGCTCATTCTAAAAAAGATAGGCATGGG

             
        896 A
          1 A

        897 CCTCACCGTT


Statistics
Matches: 44,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  44   44  1.00

ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25


Consensus pattern (44 bp):   
AAAGTTGCGTACTCCTGGCTCATTCTAAAAAAGATAGGCATGGG
Done.