Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g03793.P32

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6848
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:3959 original size:17 final size:17

Alignment explanation


    Indices: 3937--3970  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       3927 AGCTCAATTA

                             
       3937 ATTGTTGGTTAGTGAAT
          1 ATTGTTGGTTAGTGAAT

                             
       3954 ATTGTTGGTTAGTGAAT
          1 ATTGTTGGTTAGTGAAT

       3971 GCGTTCTTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47


Consensus pattern (17 bp):   
ATTGTTGGTTAGTGAAT
Done.