Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00007.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 461

Length: 769
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.37


Found at i:552 original size:33 final size:33

Alignment explanation


    Indices: 508--576  Score: 102
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        498 AGTGTCAGAC

                                             
        508 GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT
          1 GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT

                  *        *      *       *  
        541 GCGTGGGGCGTGGTGGCCAAGGTTGAGGGGTAT
          1 GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT

               
        574 GCG
          1 GCG

        577 GCGGCTGAAG


Statistics
Matches: 32,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  33   32  1.00

ACGTcount: A:0.14, C:0.16, G:0.52, T:0.17


Consensus pattern (33 bp):   
GCGTGGAGCGTGGTGACCAAGGCTGAGGGGCAT
Done.