Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00020.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1316
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29


Found at i:1170 original size:24 final size:24

Alignment explanation


    Indices: 1124--1170  Score: 58
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1114 AAGAGAGGTA

                *          *  *     
       1124 AAATCAATAAGAAAACCATTTTGT
          1 AAATAAATAAGAAAAACAGTTTGT

                            *      
       1148 AAATAAATAAGAAAAAGAGTTTG
          1 AAATAAATAAGAAAAACAGTTTG

       1171 AAGTATAATC


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  24   19  1.00

ACGTcount: A:0.55, C:0.06, G:0.13, T:0.26


Consensus pattern (24 bp):   
AAATAAATAAGAAAAACAGTTTGT
Done.