Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00024.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3896
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:725 original size:17 final size:18

Alignment explanation


    Indices: 699--733  Score: 54
    Period size: 17  Copynumber: 2.0  Consensus size: 18

        689 TACAGGAAGA

                              
        699 AAGAAGATGAT-GAGAAT
          1 AAGAAGATGATCGAGAAT

                 *            
        716 AAGAATATGATCGAGAAT
          1 AAGAAGATGATCGAGAAT

        734 CCTTTGGGGA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17   10  0.62
  18    6  0.38

ACGTcount: A:0.51, C:0.03, G:0.26, T:0.20


Consensus pattern (18 bp):   
AAGAAGATGATCGAGAAT
Done.