Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00027.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 911

Length: 1519
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35


Found at i:546 original size:12 final size:12

Alignment explanation


    Indices: 529--553  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        519 TGTGGTACCT

                        
        529 CTTCAATATCTA
          1 CTTCAATATCTA

                        
        541 CTTCAATATCTA
          1 CTTCAATATCTA

             
        553 C
          1 C

        554 AACAAACAGG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.32, C:0.28, G:0.00, T:0.40


Consensus pattern (12 bp):   
CTTCAATATCTA
Done.