Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00042.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 300

Length: 500
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29


Found at i:213 original size:12 final size:12

Alignment explanation


    Indices: 196--226  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

        186 GTGGGATGAC

                        
        196 AAGGAAGAAGGA
          1 AAGGAAGAAGGA

                        
        208 AAGGAAGAAGGA
          1 AAGGAAGAAGGA

                   
        220 AAGGAAG
          1 AAGGAAG

        227 TAACACAGCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00


Consensus pattern (12 bp):   
AAGGAAGAAGGA
Done.