Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00047.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 928

Length: 1548
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29


Found at i:1120 original size:57 final size:58

Alignment explanation


    Indices: 1041--1171  Score: 171
    Period size: 57  Copynumber: 2.3  Consensus size: 58

       1031 CCAGGTCGTT

                 *                         *                            
       1041 GGTCCACTCGGCTTAA-AGAAGTAGCCAAA-TCAGA-CATCTTATCACCAGTTGTTCATC
          1 GGTCCCCTCGGCTTAAGAGAAGTAG-CAAAGCCAGATC-TCTTATCACCAGTTGTTCATC

                                                  *                *  
       1098 GGTCCCCTCGGCTTAAGA-AAGTAGCAAAGCCAGATCTTTTATCACCAGTTGTTCGTC
          1 GGTCCCCTCGGCTTAAGAGAAGTAGCAAAGCCAGATCTCTTATCACCAGTTGTTCATC

            *                
       1155 AGTCCCCTCGGCTTAAG
          1 GGTCCCCTCGGCTTAAG

       1172 GCTAAGAAAT


Statistics
Matches: 66,  Mismatches: 5, Indels: 6
        0.86            0.06        0.08

Matches are distributed among these distances:
  56    4  0.06
  57   60  0.91
  58    2  0.03

ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27


Consensus pattern (58 bp):   
GGTCCCCTCGGCTTAAGAGAAGTAGCAAAGCCAGATCTCTTATCACCAGTTGTTCATC
Done.