Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00053.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3097
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37


Found at i:2129 original size:48 final size:48

Alignment explanation


    Indices: 2058--2159  Score: 204
    Period size: 48  Copynumber: 2.1  Consensus size: 48

       2048 GTTATATACA

                                                            
       2058 TTTGGTTTAATATAACTTTTAGTCCTTGAACTTGGCAATTAGGTCCAC
          1 TTTGGTTTAATATAACTTTTAGTCCTTGAACTTGGCAATTAGGTCCAC

                                                            
       2106 TTTGGTTTAATATAACTTTTAGTCCTTGAACTTGGCAATTAGGTCCAC
          1 TTTGGTTTAATATAACTTTTAGTCCTTGAACTTGGCAATTAGGTCCAC

                  
       2154 TTTGGT
          1 TTTGGT

       2160 CCCTAAAGCT


Statistics
Matches: 54,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   54  1.00

ACGTcount: A:0.24, C:0.16, G:0.18, T:0.43


Consensus pattern (48 bp):   
TTTGGTTTAATATAACTTTTAGTCCTTGAACTTGGCAATTAGGTCCAC
Done.