Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00075.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3237
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:2127 original size:19 final size:20

Alignment explanation


    Indices: 2090--2126  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       2080 TGCTTGTTTA

                        *       
       2090 TTTTTATCTGTAGAATTTTC
          1 TTTTTATCTGTACAATTTTC

                               
       2110 TTTTTAT-TGTAC-ATTTT
          1 TTTTTATCTGTACAATTTT

       2127 TTTCTAATGC


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  18    5  0.31
  19    4  0.25
  20    7  0.44

ACGTcount: A:0.19, C:0.08, G:0.08, T:0.65


Consensus pattern (20 bp):   
TTTTTATCTGTACAATTTTC
Done.