Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00116.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3099
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:2528 original size:33 final size:33

Alignment explanation


    Indices: 2491--2566  Score: 107
    Period size: 33  Copynumber: 2.3  Consensus size: 33

       2481 TTTGATGACT

                                           * 
       2491 ATGAAGATGATAGCGAATTCGTTGACGACCATG
          1 ATGAAGATGATAGCGAATTCGTTGACGACCACG

                  *            *     *   *   
       2524 ATGAAGGTGATAGCGAATTTGTTGATGACGACG
          1 ATGAAGATGATAGCGAATTCGTTGACGACCACG

                      
       2557 ATGAAGATGA
          1 ATGAAGATGA

       2567 GGCTGACAAC


Statistics
Matches: 37,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  33   37  1.00

ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25


Consensus pattern (33 bp):   
ATGAAGATGATAGCGAATTCGTTGACGACCACG
Done.