Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00119.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 409

Length: 682
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24


Found at i:484 original size:3 final size:3

Alignment explanation


    Indices: 478--502  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        468 AATAACAACG

                                             
        478 ATA ATA ATA ATA ATA ATA ATA ATA A
          1 ATA ATA ATA ATA ATA ATA ATA ATA A

        503 CAGAAGGGAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
ATA

Done.