Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00535.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3370
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.25


Found at i:673 original size:40 final size:40

Alignment explanation


    Indices: 618--696  Score: 158
    Period size: 40  Copynumber: 2.0  Consensus size: 40

        608 TCCTTTGATG

                                                    
        618 TTTAGAGAGGAAAACTGGTTTCGTGAAAGAGAATCAAACA
          1 TTTAGAGAGGAAAACTGGTTTCGTGAAAGAGAATCAAACA

                                                   
        658 TTTAGAGAGGAAAACTGGTTTCGTGAAAGAGAATCAAAC
          1 TTTAGAGAGGAAAACTGGTTTCGTGAAAGAGAATCAAAC

        697 TTATACCTAT


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  40   39  1.00

ACGTcount: A:0.42, C:0.10, G:0.25, T:0.23


Consensus pattern (40 bp):   
TTTAGAGAGGAAAACTGGTTTCGTGAAAGAGAATCAAACA
Done.