Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00156.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2195
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:1401 original size:115 final size:113

Alignment explanation


    Indices: 1197--1402  Score: 279
    Period size: 115  Copynumber: 1.8  Consensus size: 113

       1187 TGAATTTAAT

                             *                  *  *            *            
       1197 AATTTTTTTTGTCCTCGTAACTTATTTGATTAATAGTTGTATCCCATTATATTGCACTACTTTAT
          1 AATTTTTTTTGTCCTCGCAACTTATTTGATTAATAGCTGCATCCCATTATATGGCACTACTTTAT

                           **                               
       1262 TAACATTAAATCTATTTATATGTGAATTTTTCGAATATCAAAATCTAC
         66 TAACATTAAATCTATCCATATGTGAATTTTTCGAATATCAAAATCTAC

                          *       *           *         *                    
       1310 AATTATTTTTTGATGCTCGCAATTTATTTGATTAGTAGCTGCATGCCATTAGT-TGGCACTACTT
          1 AATT-TTTTTTG-TCCTCGCAACTTATTTGATTAATAGCTGCATCCCATTA-TATGGCACTACTT

                                  *      
       1374 TATTAACATTAAATCTATCCATGTGTGAA
         63 TATTAACATTAAATCTATCCATATGTGAA

       1403 ATGTGTGATT


Statistics
Matches: 79,  Mismatches: 11, Indels: 4
        0.84            0.12        0.04

Matches are distributed among these distances:
 113    4  0.05
 114    7  0.09
 115   67  0.85
 116    1  0.01

ACGTcount: A:0.30, C:0.15, G:0.11, T:0.45


Consensus pattern (113 bp):   
AATTTTTTTTGTCCTCGCAACTTATTTGATTAATAGCTGCATCCCATTATATGGCACTACTTTAT
TAACATTAAATCTATCCATATGTGAATTTTTCGAATATCAAAATCTAC
Done.