Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00159.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2419
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35


Found at i:1993 original size:14 final size:14

Alignment explanation


    Indices: 1974--2000  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       1964 ATATAGCACT

                          
       1974 TGGATGGATGGATA
          1 TGGATGGATGGATA

                         
       1988 TGGATGGATGGAT
          1 TGGATGGATGGAT

       2001 TCATGCATGC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.26, C:0.00, G:0.44, T:0.30


Consensus pattern (14 bp):   
TGGATGGATGGATA

Found at i:2273 original size:15 final size:16

Alignment explanation


    Indices: 2252--2283  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       2242 GAAAATATAG

                            
       2252 AAAAAAAATAGGGATT
          1 AAAAAAAATAGGGATT

                            
       2268 AAAAAAAATAGGGATT
          1 AAAAAAAATAGGGATT

       2284 TTTTATTTTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19


Consensus pattern (16 bp):   
AAAAAAAATAGGGATT
Done.