Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00182.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 986

Length: 1644
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34


Found at i:1532 original size:3 final size:3

Alignment explanation


    Indices: 1524--1553  Score: 51
    Period size: 3  Copynumber: 10.0  Consensus size: 3

       1514 AAGTGGCTGT

                                      *            
       1524 TGA TGA TGA TGA TGA TGA TGC TGA TGA TGA
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA

       1554 CAGCAAATTA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33


Consensus pattern (3 bp):   
TGA

Done.