Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00184.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3161
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28


Found at i:2367 original size:3 final size:3

Alignment explanation


    Indices: 2359--2395  Score: 65
    Period size: 3  Copynumber: 12.3  Consensus size: 3

       2349 ACCAACTCCA

                                                      *      
       2359 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG C
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG C

       2396 TTAGTGGTAA


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   32  1.00

ACGTcount: A:0.35, C:0.35, G:0.30, T:0.00


Consensus pattern (3 bp):   
CAG

Done.