Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00202.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3796
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31


Found at i:2225 original size:156 final size:153

Alignment explanation


    Indices: 1758--2225  Score: 598
    Period size: 156  Copynumber: 3.0  Consensus size: 153

       1748 TCAAGACTAT

                   *            *                                            
       1758 GTCACAATTCAATGATCTTGCTTTTTTCTTGAATCCCCAGAAAAGTAGCGCTAGAGAAAATGCTG
          1 GTCACAAGTCAATGATCTTGATTTTTTCTTGAATCCCCAGAAAAGTAGCGCTAGAG-AAATGCTG

                  *      *                                           *       
       1823 GACCTGAGGCCATCTCTTCCAATCCAAAGGCTGAATTACCCAATGTTTCATCTGGTCGTTCAGTT
         65 GACCTGCGGCCATGTCTT-CAA-CCAAAGGCTGAATTACCCAATGTTTCATCTGGTCATTCAGTT

                      *      *       *
       1888 GAAGCATGTGAATCCACTGGTCTACA
        128 GAAGCATGTGCATCCACGGGTCTACC

                          *  **                            **                
       1914 GTCACAAGTCAATGGTCCAGATTTTTTCTTGAATCCCCAGAAAAGTATTGCTAGAGAAGATGCTG
          1 GTCACAAGTCAATGATCTTGATTTTTTCTTGAATCCCCAGAAAAGTAGCGCTAGAGAA-ATGCTG

            *           *      *                *                        *   
       1979 CACCTGCGGCCAGGTCTTTTAACCGAAAGGCTGAATCACCCAATGGTTT-ATCTGGTCATTTAGT
         65 GACCTGCGGCCATGTC-TTCAACC-AAAGGCTGAATTACCCAAT-GTTTCATCTGGTCATTCAGT

                 * *    * *             
       2043 TGAAGTACGTGCTTACACTGGG-CTACC
        127 TGAAGCATGTGCATCCAC-GGGTCTACC

              *                                              *               
       2070 GTTACAAGTCAATGATCTTGATTTTTTCTTGAATCCCCAGAAAAGTAGCACTAGAGATAATGCTG
          1 GTCACAAGTCAATGATCTTGATTTTTTCTTGAATCCCCAGAAAAGTAGCGCTAGAGA-AATGCTG

                                    *                                        
       2135 GACCTGCGGCCATGTCATTCAACCCAAGGTCTGAATTACCCAATGTTTCATCTGGTCATTCAGTT
         65 GACCTGCGGCCATGTC-TTCAACCAAAGG-CTGAATTACCCAATGTTTCATCTGGTCATTCAGTT

                                      
       2200 GAAGCATGTGCATCCACGGGTCTACC
        128 GAAGCATGTGCATCCACGGGTCTACC

       2226 ATTGCAGCAG


Statistics
Matches: 263,  Mismatches: 40, Indels: 18
        0.82            0.12        0.06

Matches are distributed among these distances:
 155   15  0.06
 156  239  0.91
 157    9  0.03

ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29


Consensus pattern (153 bp):   
GTCACAAGTCAATGATCTTGATTTTTTCTTGAATCCCCAGAAAAGTAGCGCTAGAGAAATGCTGG
ACCTGCGGCCATGTCTTCAACCAAAGGCTGAATTACCCAATGTTTCATCTGGTCATTCAGTTGAA
GCATGTGCATCCACGGGTCTACC
Done.