Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga12g00217.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2687
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Found at i:1674 original size:87 final size:87
Alignment explanation
Indices: 1528--1875 Score: 651
Period size: 87 Copynumber: 4.0 Consensus size: 87
1518 CATACACGGA
1528 AGCATTTTCCCTTGCAAGCTTTTAGTGCAGAAGAAAGTGACATGACAGTTAAGGCTACTACACAA
1 AGCATTTTCCCTTGCAAGCTTTTAGTGCAGAAGAAAGTGACATGACAGTTAAGGCTACTACACAA
** * *
1593 GAAACCAAAATACTAGACGAGG
66 GAAACCACGACACTAGACAAGG
1615 AGCATTTTCCCTTGCAAGCTTTTAGTGCAGAAGAAAGTGACATGACAGTTAAGGCTACTACACAA
1 AGCATTTTCCCTTGCAAGCTTTTAGTGCAGAAGAAAGTGACATGACAGTTAAGGCTACTACACAA
*
1680 GAAAACACGACACTAGACAAGG
66 GAAACCACGACACTAGACAAGG
1702 AGCATTTTCCCTTGCAAGCTTTTAGTGCAGAAGAAAGTGACATGACAGTTAAGGCTACTACACAA
1 AGCATTTTCCCTTGCAAGCTTTTAGTGCAGAAGAAAGTGACATGACAGTTAAGGCTACTACACAA
1767 GAAACCACGACACTAGACAAGG
66 GAAACCACGACACTAGACAAGG
1789 AGCATTTTCCCTTGCAAGCTTTTAGTGCAGAAGAAAGTGACATGACAGTTAAGGCTACTACACAA
1 AGCATTTTCCCTTGCAAGCTTTTAGTGCAGAAGAAAGTGACATGACAGTTAAGGCTACTACACAA
1854 GAAACCACGACACTAGACAAGG
66 GAAACCACGACACTAGACAAGG
1876 TTAATGTGAC
Statistics
Matches: 255, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 255 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (87 bp):
AGCATTTTCCCTTGCAAGCTTTTAGTGCAGAAGAAAGTGACATGACAGTTAAGGCTACTACACAA
GAAACCACGACACTAGACAAGG
Done.