Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00221.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3395
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:2249 original size:30 final size:33

Alignment explanation


    Indices: 2189--2249  Score: 83
    Period size: 32  Copynumber: 1.9  Consensus size: 33

       2179 TCTACTAAAA

                        *                    
       2189 AAAATGAGCAAATTAGTTCCTGTATGTTACATC
          1 AAAATGAGCAAACTAGTTCCTGTATGTTACATC

                                   *       
       2222 AAAA-GAGCAAACTAG-TCCT-TCTGTTACA
          1 AAAATGAGCAAACTAGTTCCTGTATGTTACA

       2250 AGTTCTATCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  30    8  0.31
  31    4  0.15
  32   10  0.38
  33    4  0.15

ACGTcount: A:0.38, C:0.18, G:0.15, T:0.30


Consensus pattern (33 bp):   
AAAATGAGCAAACTAGTTCCTGTATGTTACATC
Done.