Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00231.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1811
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30


Found at i:532 original size:79 final size:80

Alignment explanation


    Indices: 392--554  Score: 265
    Period size: 79  Copynumber: 2.0  Consensus size: 80

        382 ACTTTAGACA

                                      *  *                                   
        392 AGTTCCGTTTTGCAGTTTGAAAGGAATGAGGCAGGAGGGTGGTTGAGGAATGAAGGATATCTTTT
          1 AGTTCCGTTTTGCAGTTTGAAAGGAAAGAAGCAGGAGGGTGGTTGAGGAATGAAGGATATCTTTT

                      *    
        457 ATTCCTTTCAGTCG-
         66 ATTCCTTTCAATCGT

                *                           *                       *        
        471 AGTTTCGTTTTGCAGTTTGAAAGGAAAGAAGCGGGAGGGTGGTTGAGGAATGAAGGGTATCTTTT
          1 AGTTCCGTTTTGCAGTTTGAAAGGAAAGAAGCAGGAGGGTGGTTGAGGAATGAAGGATATCTTTT

                           
        536 ATTCCTTTCAATCGT
         66 ATTCCTTTCAATCGT

                
        551 AGTT
          1 AGTT

        555 AGTAATCTCT


Statistics
Matches: 77,  Mismatches: 6, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
  79   73  0.95
  80    4  0.05

ACGTcount: A:0.25, C:0.10, G:0.31, T:0.34


Consensus pattern (80 bp):   
AGTTCCGTTTTGCAGTTTGAAAGGAAAGAAGCAGGAGGGTGGTTGAGGAATGAAGGATATCTTTT
ATTCCTTTCAATCGT
Done.