Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00242.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 496

Length: 828
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.31


Found at i:41 original size:30 final size:30

Alignment explanation


    Indices: 5--96  Score: 157
    Period size: 30  Copynumber: 3.1  Consensus size: 30

          1 ATGG

                        *       *         
          5 CAGAGAAGATCAGTGATGAAACCCCAAATC
          1 CAGAGAAGATCAATGATGAATCCCCAAATC

                                          
         35 CAGAGAAGATCAATGATGAATCCCCAAATC
          1 CAGAGAAGATCAATGATGAATCCCCAAATC

                   *                      
         65 CAGAGAAAATCAATGATGAATCCCCAAATC
          1 CAGAGAAGATCAATGATGAATCCCCAAATC

              
         95 CA
          1 CA

         97 TTGGCACCAA


Statistics
Matches: 59,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  30   59  1.00

ACGTcount: A:0.45, C:0.24, G:0.16, T:0.15


Consensus pattern (30 bp):   
CAGAGAAGATCAATGATGAATCCCCAAATC
Done.