Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00257.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2203
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29


Found at i:2094 original size:22 final size:22

Alignment explanation


    Indices: 2068--2132  Score: 67
    Period size: 22  Copynumber: 3.0  Consensus size: 22

       2058 ATATCCAAAC

                                  
       2068 AATAACAATAAAATAGTAGTAA
          1 AATAACAATAAAATAGTAGTAA

            *    *         ** *   
       2090 TATAATAATAAAATAACATTAA
          1 AATAACAATAAAATAGTAGTAA

              *     *            
       2112 AACAACAACAAAATAGTAGTA
          1 AATAACAATAAAATAGTAGTA

       2133 GAAAAAAATT


Statistics
Matches: 31,  Mismatches: 12, Indels: 0
        0.72            0.28        0.00

Matches are distributed among these distances:
  22   31  1.00

ACGTcount: A:0.63, C:0.08, G:0.06, T:0.23


Consensus pattern (22 bp):   
AATAACAATAAAATAGTAGTAA
Done.