Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00357.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2058
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30


Found at i:1892 original size:23 final size:23

Alignment explanation


    Indices: 1866--1911  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1856 TGGTTAGTAA

                                   
       1866 CTTATTTTAATCCTGTTTTATTT
          1 CTTATTTTAATCCTGTTTTATTT

                                   
       1889 CTTATTTTAATCCTGTTTTATTT
          1 CTTATTTTAATCCTGTTTTATTT

       1912 TCTTGTGACT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.17, C:0.13, G:0.04, T:0.65


Consensus pattern (23 bp):   
CTTATTTTAATCCTGTTTTATTT
Done.