Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00548.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1678
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:42 original size:14 final size:14

Alignment explanation


    Indices: 19--53  Score: 54
    Period size: 14  Copynumber: 2.6  Consensus size: 14

          9 ACTTATATTC

                          
         19 AAAAAA-AAAAAAA
          1 AAAAAAGAAAAAAA

                       *  
         32 AAAAAAGAAAAGAA
          1 AAAAAAGAAAAAAA

                    
         46 AAAAAAGA
          1 AAAAAAGA

         54 TGGGACTAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  13    6  0.30
  14   14  0.70

ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00


Consensus pattern (14 bp):   
AAAAAAGAAAAAAA
Done.