Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00268.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 563

Length: 939
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34


Found at i:66 original size:24 final size:25

Alignment explanation


    Indices: 39--86  Score: 62
    Period size: 25  Copynumber: 2.0  Consensus size: 25

         29 TTATGAAGTT

                        **           
         39 TTTCT-CACCTTTTGGACCATTTTA
          1 TTTCTCCACCTTAGGGACCATTTTA

                    *               
         63 TTTCTCCATCTTAGGGACCATTTT
          1 TTTCTCCACCTTAGGGACCATTTT

         87 TTGTTTCTTT


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  24    5  0.25
  25   15  0.75

ACGTcount: A:0.17, C:0.25, G:0.10, T:0.48


Consensus pattern (25 bp):   
TTTCTCCACCTTAGGGACCATTTTA
Done.