Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00269.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1733
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:1217 original size:15 final size:16

Alignment explanation


    Indices: 1183--1219  Score: 51
    Period size: 15  Copynumber: 2.4  Consensus size: 16

       1173 AACAACCAGT

                         *  
       1183 TCAA-ACAATGGGTCA
          1 TCAATACAATGGGACA

                            
       1198 TCAATACAATGGGACA
          1 TCAATACAATGGGACA

                   
       1214 -CAATAC
          1 TCAATAC

       1220 GCTCCGGGTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  15   10  0.50
  16   10  0.50

ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19


Consensus pattern (16 bp):   
TCAATACAATGGGACA

Found at i:1440 original size:4 final size:4

Alignment explanation


    Indices: 1431--1461  Score: 62
    Period size: 4  Copynumber: 7.8  Consensus size: 4

       1421 ATGTAATAGC

                                                  
       1431 ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATC
          1 ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATC

       1462 AAGTATGAAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   27  1.00

ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48


Consensus pattern (4 bp):   
ATCT

Done.