Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00312.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1258
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30


Found at i:232 original size:102 final size:102

Alignment explanation


    Indices: 56--260  Score: 401
    Period size: 102  Copynumber: 2.0  Consensus size: 102

         46 CCGTCGTTAC

                                                     *                       
         56 GAAAATCCCCTGGTCTTCCTTTCCATCCTTCATTATTCTCGTCGCCCCTTACTCAGAAGACCCTC
          1 GAAAATCCCCTGGTCTTCCTTTCCATCCTTCATTATTCTCGCCGCCCCTTACTCAGAAGACCCTC

                                                 
        121 ACTTTCTCGACTGGGACTAGAGCCGTTTCGGGGTCCG
         66 ACTTTCTCGACTGGGACTAGAGCCGTTTCGGGGTCCG

                                                                             
        158 GAAAATCCCCTGGTCTTCCTTTCCATCCTTCATTATTCTCGCCGCCCCTTACTCAGAAGACCCTC
          1 GAAAATCCCCTGGTCTTCCTTTCCATCCTTCATTATTCTCGCCGCCCCTTACTCAGAAGACCCTC

                                                 
        223 ACTTTCTCGACTGGGACTAGAGCCGTTTCGGGGTCCG
         66 ACTTTCTCGACTGGGACTAGAGCCGTTTCGGGGTCCG

             
        260 G
          1 G

        261 GAAGTTTTGT


Statistics
Matches: 102,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 102  102  1.00

ACGTcount: A:0.17, C:0.35, G:0.19, T:0.30


Consensus pattern (102 bp):   
GAAAATCCCCTGGTCTTCCTTTCCATCCTTCATTATTCTCGCCGCCCCTTACTCAGAAGACCCTC
ACTTTCTCGACTGGGACTAGAGCCGTTTCGGGGTCCG
Done.