Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00358.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2235
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32


Found at i:831 original size:13 final size:15

Alignment explanation


    Indices: 813--846  Score: 54
    Period size: 15  Copynumber: 2.4  Consensus size: 15

        803 CCTAGGAATA

                           
        813 TAGAGG-AA-TGGAG
          1 TAGAGGTAATTGGAG

                           
        826 TAGAGGTAATTGGAG
          1 TAGAGGTAATTGGAG

                  
        841 TAGAGG
          1 TAGAGG

        847 GTGTTTTAGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  13    6  0.32
  14    2  0.11
  15   11  0.58

ACGTcount: A:0.35, C:0.00, G:0.44, T:0.21


Consensus pattern (15 bp):   
TAGAGGTAATTGGAG

Found at i:2040 original size:18 final size:18

Alignment explanation


    Indices: 2013--2047  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       2003 TTGATAATTA

                 *            
       2013 TTAAGTATTTTAAGTTAT
          1 TTAAGAATTTTAAGTTAT

                        *    
       2031 TTAAGAATTTTATGTTA
          1 TTAAGAATTTTAAGTTA

       2048 GCAAGAAAGT


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.34, C:0.00, G:0.11, T:0.54


Consensus pattern (18 bp):   
TTAAGAATTTTAAGTTAT
Done.