Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00561.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4612
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:2443 original size:21 final size:21

Alignment explanation


    Indices: 2417--2457  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2407 TTGCTTCTCA

                                 
       2417 AAAAAATACTTCAATTGACCT
          1 AAAAAATACTTCAATTGACCT

                                
       2438 AAAAAATACTTCAATTGACC
          1 AAAAAATACTTCAATTGACC

       2458 CAAGTCTTTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.49, C:0.20, G:0.05, T:0.27


Consensus pattern (21 bp):   
AAAAAATACTTCAATTGACCT
Done.