Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00358.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696

Length: 1161
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.32


Found at i:731 original size:24 final size:25

Alignment explanation


    Indices: 699--747  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        689 ACTGGAGACG

                                     
        699 GGTTACCAT-TCCGCTGCCTTAGTA
          1 GGTTACCATCTCCGCTGCCTTAGTA

                                     
        723 GGTTACCATCTCCGCTGCCTTAGTA
          1 GGTTACCATCTCCGCTGCCTTAGTA

        748 TAAGAATCTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  24    9  0.38
  25   15  0.62

ACGTcount: A:0.16, C:0.31, G:0.20, T:0.33


Consensus pattern (25 bp):   
GGTTACCATCTCCGCTGCCTTAGTA

Found at i:898 original size:42 final size:42

Alignment explanation


    Indices: 839--922  Score: 168
    Period size: 42  Copynumber: 2.0  Consensus size: 42

        829 ATGACACAGC

                                                      
        839 TTTGCAATCGAGCTATATACCTTAGAAGTTACAAAAGTGCAG
          1 TTTGCAATCGAGCTATATACCTTAGAAGTTACAAAAGTGCAG

                                                      
        881 TTTGCAATCGAGCTATATACCTTAGAAGTTACAAAAGTGCAG
          1 TTTGCAATCGAGCTATATACCTTAGAAGTTACAAAAGTGCAG

        923 AAGCTTGAAA


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  42   42  1.00

ACGTcount: A:0.36, C:0.17, G:0.19, T:0.29


Consensus pattern (42 bp):   
TTTGCAATCGAGCTATATACCTTAGAAGTTACAAAAGTGCAG
Done.