Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00566.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2293
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32


Found at i:296 original size:27 final size:27

Alignment explanation


    Indices: 258--311  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        248 TAAGAGAGAC

                                       
        258 ATGGAAGCTGTTTTACAAACCAGATGT
          1 ATGGAAGCTGTTTTACAAACCAGATGT

                                       
        285 ATGGAAGCTGTTTTACAAACCAGATGT
          1 ATGGAAGCTGTTTTACAAACCAGATGT

        312 CTTCTCTCAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30


Consensus pattern (27 bp):   
ATGGAAGCTGTTTTACAAACCAGATGT
Done.