Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00372.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3157
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35


Found at i:2678 original size:13 final size:13

Alignment explanation


    Indices: 2660--2687  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       2650 TTGTTACAAA

                         
       2660 ATCCATGGGTTGG
          1 ATCCATGGGTTGG

                         
       2673 ATCCATGGGTTGG
          1 ATCCATGGGTTGG

              
       2686 AT
          1 AT

       2688 TGATTTTAGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.18, C:0.14, G:0.36, T:0.32


Consensus pattern (13 bp):   
ATCCATGGGTTGG
Done.