Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00379.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 980

Length: 1634
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25


Found at i:70 original size:1 final size:1

Alignment explanation


    Indices: 59--89  Score: 53
    Period size: 1  Copynumber: 31.0  Consensus size: 1

         49 GTCCCCACAT

                  *                        
         59 AAAAAACAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

         90 GAGGAAGAAG


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   1   28  1.00

ACGTcount: A:0.97, C:0.03, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Done.