Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00383.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3919
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:2072 original size:28 final size:28

Alignment explanation


    Indices: 2036--2093  Score: 116
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       2026 CATACTTGTA

                                        
       2036 TAAGCGTAAATTTTAATATAGTTGCTTG
          1 TAAGCGTAAATTTTAATATAGTTGCTTG

                                        
       2064 TAAGCGTAAATTTTAATATAGTTGCTTG
          1 TAAGCGTAAATTTTAATATAGTTGCTTG

              
       2092 TA
          1 TA

       2094 TTAGTGCTTT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   30  1.00

ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43


Consensus pattern (28 bp):   
TAAGCGTAAATTTTAATATAGTTGCTTG
Done.