Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00574.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4128
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31


Found at i:3108 original size:129 final size:129

Alignment explanation


    Indices: 2958--3215  Score: 507
    Period size: 129  Copynumber: 2.0  Consensus size: 129

       2948 ACTTGAGTAA

                                                          *                  
       2958 ACATTCTTTAAAGTTAATTAGAAATGATAAATTATTATTCAATAATTTATCATCTATCCTTAAAC
          1 ACATTCTTTAAAGTTAATTAGAAATGATAAATTATTATTCAATAATATATCATCTATCCTTAAAC

                                                                            
       3023 AGTGTCATCAATGGTAAAAATAAGTATTTTGTACTAGAATTGCAACTGGAAGGCACCTTTCTAG
         66 AGTGTCATCAATGGTAAAAATAAGTATTTTGTACTAGAATTGCAACTGGAAGGCACCTTTCTAG

                                                                             
       3087 ACATTCTTTAAAGTTAATTAGAAATGATAAATTATTATTCAATAATATATCATCTATCCTTAAAC
          1 ACATTCTTTAAAGTTAATTAGAAATGATAAATTATTATTCAATAATATATCATCTATCCTTAAAC

                                                                            
       3152 AGTGTCATCAATGGTAAAAATAAGTATTTTGTACTAGAATTGCAACTGGAAGGCACCTTTCTAG
         66 AGTGTCATCAATGGTAAAAATAAGTATTTTGTACTAGAATTGCAACTGGAAGGCACCTTTCTAG

       3216 TTCAAATCTC


Statistics
Matches: 128,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 129  128  1.00

ACGTcount: A:0.38, C:0.13, G:0.12, T:0.36


Consensus pattern (129 bp):   
ACATTCTTTAAAGTTAATTAGAAATGATAAATTATTATTCAATAATATATCATCTATCCTTAAAC
AGTGTCATCAATGGTAAAAATAAGTATTTTGTACTAGAATTGCAACTGGAAGGCACCTTTCTAG
Done.