Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00577.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5621
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34


Found at i:821 original size:22 final size:22

Alignment explanation


    Indices: 796--852  Score: 71
    Period size: 22  Copynumber: 2.6  Consensus size: 22

        786 AACATGTGCA

                                  
        796 TGTGCGAACCTCTTCCATGCCT
          1 TGTGCGAACCTCTTCCATGCCT

                 *      *  *    * 
        818 TGTGCAAACCTCATCTATGCGT
          1 TGTGCGAACCTCTTCCATGCCT

                          
        840 TGTGCGAA-CTCTT
          1 TGTGCGAACCTCTT

        853 AGCATGAATC


Statistics
Matches: 29,  Mismatches: 6, Indels: 1
        0.81            0.17        0.03

Matches are distributed among these distances:
  21    4  0.14
  22   25  0.86

ACGTcount: A:0.18, C:0.30, G:0.19, T:0.33


Consensus pattern (22 bp):   
TGTGCGAACCTCTTCCATGCCT

Found at i:946 original size:2 final size:2

Alignment explanation


    Indices: 934--969  Score: 63
    Period size: 2  Copynumber: 17.5  Consensus size: 2

        924 GTTAGGTTAA

                                                                 
        934 AT AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

        970 GGCCTCTAAA


Statistics
Matches: 33,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2   31  0.94
   3    2  0.06

ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47


Consensus pattern (2 bp):   
AT

Done.