Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00443.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3079
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33


Found at i:647 original size:30 final size:30

Alignment explanation


    Indices: 612--671  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        602 GATGAGTCCC

                                          
        612 TTCAGCATGGTTGACCAATTTGAGGTTTAA
          1 TTCAGCATGGTTGACCAATTTGAGGTTTAA

                                          
        642 TTCAGCATGGTTGACCAATTTGAGGTTTAA
          1 TTCAGCATGGTTGACCAATTTGAGGTTTAA

        672 CTCGTTTGAA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37


Consensus pattern (30 bp):   
TTCAGCATGGTTGACCAATTTGAGGTTTAA
Done.