Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00455.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4595
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29


Found at i:2186 original size:16 final size:17

Alignment explanation


    Indices: 2153--2186  Score: 52
    Period size: 18  Copynumber: 2.0  Consensus size: 17

       2143 GGACACATAT

                              
       2153 CTAAGCTACAGTCAAGCC
          1 CTAAGCTACAG-CAAGCC

                             
       2171 CTAAGCTACA-CAAGCC
          1 CTAAGCTACAGCAAGCC

       2187 AAGCTCTTAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    6  0.38
  18   10  0.62

ACGTcount: A:0.35, C:0.35, G:0.15, T:0.15


Consensus pattern (17 bp):   
CTAAGCTACAGCAAGCC
Done.