Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00473.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 871

Length: 1452
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35


Found at i:1203 original size:15 final size:15

Alignment explanation


    Indices: 1173--1222  Score: 55
    Period size: 15  Copynumber: 3.3  Consensus size: 15

       1163 TCCTCATCAG

                 *   *     
       1173 TACCCTCCAGCTGGT
          1 TACCCACCACCTGGT

              *   *        
       1188 TATCCAGCACCTGGT
          1 TACCCACCACCTGGT

                     *     
       1203 TACCCACCATCTGGT
          1 TACCCACCACCTGGT

                 
       1218 TACCC
          1 TACCC

       1223 TAAGTGATCT


Statistics
Matches: 28,  Mismatches: 7, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  15   28  1.00

ACGTcount: A:0.18, C:0.40, G:0.16, T:0.26


Consensus pattern (15 bp):   
TACCCACCACCTGGT
Done.