Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00583.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1684
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36


Found at i:1005 original size:38 final size:39

Alignment explanation


    Indices: 962--1037  Score: 136
    Period size: 38  Copynumber: 2.0  Consensus size: 39

        952 TTAGATTTGA

                                         *         
        962 TGTATGGTTTTGTTTCACCTTCATCTTACGTAT-ATTGT
          1 TGTATGGTTTTGTTTCACCTTCATCTTACATATGATTGT

                                                  
       1000 TGTATGGTTTTGTTTCACCTTCATCTTACATATGATTG
          1 TGTATGGTTTTGTTTCACCTTCATCTTACATATGATTG

       1038 CTACTTCTTT


Statistics
Matches: 36,  Mismatches: 1, Indels: 1
        0.95            0.03        0.03

Matches are distributed among these distances:
  38   32  0.89
  39    4  0.11

ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51


Consensus pattern (39 bp):   
TGTATGGTTTTGTTTCACCTTCATCTTACATATGATTGT
Done.