Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00504.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 575

Length: 959
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27


Found at i:245 original size:3 final size:3

Alignment explanation


    Indices: 239--273  Score: 61
    Period size: 3  Copynumber: 11.7  Consensus size: 3

        229 AGGAGGACAT

                                                    *     
        239 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA ACA GC
          1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GC

        274 CACAGCCTGT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.34, C:0.34, G:0.31, T:0.00


Consensus pattern (3 bp):   
GCA

Done.