Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00534.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2732
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Found at i:2710 original size:33 final size:33

Alignment explanation


    Indices: 2643--2710  Score: 84
    Period size: 33  Copynumber: 2.1  Consensus size: 33

       2633 GCATGATCAA

                 *                *      *   
       2643 GAATTTGATATTCCTTAACAAAGTCTCCTGTTT
          1 GAATTCGATATTCCTTAACAAAATCTCCTATTT

                                        *     
       2676 GAATTCGATATTCCTTGAA-AAAATCTCTTATTT
          1 GAATTCGATATTCCTT-AACAAAATCTCCTATTT

              
       2709 GA
          1 GA

       2711 GTTCAATAAG


Statistics
Matches: 30,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  33   28  0.93
  34    2  0.07

ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41


Consensus pattern (33 bp):   
GAATTCGATATTCCTTAACAAAATCTCCTATTT
Done.