Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00534.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3127
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33


Found at i:835 original size:2 final size:2

Alignment explanation


    Indices: 828--854  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

        818 TTTGTCCCTT

                                                    
        828 TG TG TG TG TG TG TG TG TG TG TG TG TG T
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG T

        855 AGTTCCATGC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52


Consensus pattern (2 bp):   
TG

Found at i:3105 original size:33 final size:33

Alignment explanation


    Indices: 3038--3105  Score: 84
    Period size: 33  Copynumber: 2.1  Consensus size: 33

       3028 GCATGATCAA

                 *                *      *   
       3038 GAATTTGATATTCCTTAACAAAGTCTCCTGTTT
          1 GAATTCGATATTCCTTAACAAAATCTCCTATTT

                                        *     
       3071 GAATTCGATATTCCTTGAA-AAAATCTCTTATTT
          1 GAATTCGATATTCCTT-AACAAAATCTCCTATTT

              
       3104 GA
          1 GA

       3106 GTTCAATAAG


Statistics
Matches: 30,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  33   28  0.93
  34    2  0.07

ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41


Consensus pattern (33 bp):   
GAATTCGATATTCCTTAACAAAATCTCCTATTT
Done.